VariantGrid Admin documentation

This documentation is for admins who configure a VariantGrid server.

For normal users, see VariantGrid user documentation or Developers Technical Wiki

Admin:

• Managing Users
  • Built in Authentication
  • Windows Authentication (LDAP)
  • KeyCloak Authentication
• Server Status
• Django Admin (admin only page)
  • Admin Actions

Sequencing:

• Scanning and auto-loading sequencing files
  • Process overview
  • Scanning filesystem
  • Troubleshooting
• SampleSheet.csv
  • Special Columns
• EnrichmentKit Setup

Annotation:

• RefSeq vs Ensembl
• Annotation Versions
• Annotation Versions

Genes:

• Gene Coverage
• Gene Lists

Patients:

• Patient record system integration

Analysis:

• Analysis - issues (admin only page)
• Analysis - templates

Classification:

• Classification Admin Pages
  • Activity
  • HGVS Issues
  • Django Admin tasks
• Classification Report
  • Configuring the report
  • Values available for the report

Indices and tables

• Index

• Module Index

• Search Page