VariantGrid Admin documentation

This documentation is for admins who configure a VariantGrid server.

For normal users, see VariantGrid user documentation or Developers Technical Wiki

Admin:

• Managing Users
  • Built in Authentication
  • Windows Authentication (LDAP)
  • KeyCloak Authentication
• Server Status
• Django Admin (admin only page)
  • Admin Actions

Sequencing:

• Sequencing Data and Automation
  • Scanning filesystem
  • Sequencing Data API
• Sequencing Scans
  • What gets searched
  • Running Scans
  • Task / Queues
  • Scheduled Tasks
  • Command line
  • Logs
  • Enabling / Disabling scans
  • Troubleshooting
• Sequencing Data API
  • URLs
  • API Token
  • variantgrid_api pip package
• SampleSheet.csv
  • CurrentSampleSheet
  • SA Pathology Special Columns
• EnrichmentKit Setup

Classification:

• Classification Admin Pages
  • Activity
  • HGVS Issues
  • Django Admin tasks
• Classification Report
  • Configuring the report
  • Values available for the report

Indices and tables

• Index

• Module Index

• Search Page